PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G090700.1.p
Common NameSb06g017580, SORBIDRAFT_06g017580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 675aa    MW: 75672.9 Da    PI: 6.7297
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G090700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.72.8e-1660156189
                  FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg......kwevtkl 81 
                           +fY+ +A+++GFs+r+++++ +    +  t+r fvC + g++  +  + + + +r+++++r+gC+a +++ k  d+      +w+v+ +
  Sobic.006G090700.1.p  60 EFYSGFARRCGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGSAPAKPLAgAPRPQRNKSSSRCGCQAYMRIGKGADDaggplpEWRVMGF 148
                           6**************9998877355667999**********99888775677888999************9998432344458****** PP

                  FAR1  82 eleHnHel 89 
                           +++HnH+l
  Sobic.006G090700.1.p 149 SNHHNHAL 156
                           ******99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1360156IPR004330FAR1 DNA binding domain
PfamPF105514.3E-19280371IPR018289MULE transposase domain
PROSITE profilePS509668.939556592IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5563592IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-4567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MTPAEPASLL ECDARGEDDS PDETRLSLET AAPSAGAGEG DSDAAPYVGQ RFPTHDAAYE  60
FYSGFARRCG FSIRRHRTEG KDGVGRGLTR RYFVCHRAGS APAKPLAGAP RPQRNKSSSR  120
CGCQAYMRIG KGADDAGGPL PEWRVMGFSN HHNHALLGQD KVRLLPAYRF ISGADRDRIL  180
MLAESGITVQ QMMRIMELEK CIEPGNLPFT EKDVRNLIQS RKVEHEEDES VDLLRMCKNF  240
KEKDPNFKFE FTKDASNHVE NIAWTYADSV QSYELFGDAV VFDTTHRLSA LDMVLGIWVG  300
LNNYGRPFFF ACVLLREENQ ISFGWALQVF LNFMNRKAPQ TILTDQNVCL KEAIEKELPS  360
TKHVLCKWLI AARFPSWFGA NLGERYKDWK NEFDRLYNMD STVAFDLGWN DMVNCYGLHG  420
NGHIGSLFAS RNLWALPYLR GYFTAGLITS PAVSKSTNAF IQQFLSAQTH LANFIEQVSI  480
IVTYKDQAGE QEMMQQNLQS ISLKTTSPIE GHAAAILTPY AFSKLQDELV ASAQYASFHL  540
EGSIFLVCHH TEEGGCSVTW NQREELISCC CQMFESSGIL CRHALHVLTA LNYFQIPDLY  600
LPVRWRWTQP PLSNSLNGAP HHPQGVASER VGALQSMVSA LVSEATKSHE RMDLATQEVY  660
LLLSKIKQQP VSFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446529.10.0hypothetical protein SORBIDRAFT_06g017580
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLC5Y8V90.0C5Y8V9_SORBI; Putative uncharacterized protein Sb06g017580
STRINGSb06g017580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11